Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9395180_9395394_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9395180 - 9395394

Intron Length:

215

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTCTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCATAAT

U12 Branch Point Sequence:

ATAGGATCAATA

Flanking Amino Acid:

SHMDSLDNHKCRGDVTKTYN

Intron Amino Acid Position:

255

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

69.4

37.1

Major BPS

75.2

0.63

1.1

74.5

36.6

Major PPT

93.2

0.97

0.6

88.8

20.4

Minor 5ss

27.5

-2.6

3.6

37.2

47.4

Minor BPS

41.7

-0.6

2.1

52.03

39.9

Associated Gene:

Gene:

RASGEF1A

Ensembl Gene ID:

ENSAPLG00000005188

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033990

9389214 - 9434400

45187

ENSAPLT00000005386

9389214 - 9433118

43905