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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_956098_965718_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
956098 - 965718
Intron Length:
9621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACAC
5'SS Class:
strong_major
3'SS Sequence:
GTGCTCTCTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
ATTACATGAGCC
Flanking Amino Acid:
KHTEYMEFLKSWKNLPNSDV
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
67.7
37.5
Major BPS
73.9
0.59
1
81
30.2
Major PPT
76.2
0.59
0.9
69.7
36.7
Minor 5ss
38.3
-1.3
3
50.3
46.3
Minor BPS
47.7
-0.1
2
64.5
40.1

Associated Gene:

Gene:
PRKG1
Ensembl Gene ID:
ENSAPLG00000003140
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028468
738722 - 965931
227210