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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_956098_993665_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
956098 - 993665
Intron Length:
37568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTGTATTGCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
TATCCATTAATC
Flanking Amino Acid:
KHTEYMEFLKSVPTFQSLPE
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.74
0.9
67.7
37.5
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
83.1
0.75
0.9
77.4
35.5
Minor 5ss
38.3
-1.3
3
50.3
46.3
Minor BPS
66.9
0.51
1.6
74.79
35

Associated Gene:

Gene:
PRKG1
Ensembl Gene ID:
ENSAPLG00000003140
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003222
738722 - 1157771
419050