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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_96347_96932_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
96347 - 96932
Intron Length:
586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTACA
5'SS Class:
strong_major
3'SS Sequence:
ATGTCCTTCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAAAC
U12 Branch Point Sequence:
TTTCTCCAAACC
Flanking Amino Acid:
VCVMFTNCMQRFTQSMKLDD
Intron Amino Acid Position:
742

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.4
29.9
Major BPS
54.8
0.12
1.1
61.2
32.7
Major PPT
63.2
0.3
1.1
60.6
40
Minor 5ss
42.1
-0.9
2.4
52.1
44.5
Minor BPS
52.5
0.06
2
72.3
38.7

Associated Gene:

Gene:
TUBGCP2
Ensembl Gene ID:
ENSAPLG00000013602
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014248
85796 - 118596
32801