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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9650016_9652690_F

Intron Information:

Intron Rank:
147695
Intron Class:
major
Intron Phase:
Intron Coordinates:
9650016 - 9652690
Intron Length:
2675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
CTACCTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
CTTTCACTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.8
84.4
33.5
Major BPS
77.7
0.69
1
81
30.2
Major PPT
78.2
0.63
0.8
69.2
36.7
Minor 5ss
42
-0.9
2.9
58.6
45.7
Minor BPS
49.7
0.06
2.2
77.85
44.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029483
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022288
9649942 - 9654178
4237