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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9664601_9664768_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9664601 - 9664768
Intron Length:
168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTGGTATA
5'SS Class:
major
3'SS Sequence:
AAATTTATTGTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTATTTTTACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1.2
79.2
36.3
Major BPS
100
1.24
0.5
100
0
Major PPT
69.9
0.45
1
64
41.6
Minor 5ss
34.3
-1.8
2.9
42.6
44.3
Minor BPS
65
0.55
1.6
84.12
36.5

Associated Gene:

Gene:
MBL2
Ensembl Gene ID:
ENSAPLG00000005476
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027844
9664515 - 9673144
8630