About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9665584_9668040_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
9665584 - 9668040
Intron Length:
2457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TCTGCTTTATTT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90
0.94
0.8
85
26.1
Major BPS
66.7
0.41
1
57.8
39
Major PPT
92.2
0.95
0.7
88.5
28.4
Minor 5ss
35.2
-1.7
2.7
39.2
40.5
Minor BPS
59.4
0.37
1.7
74.81
43.2

Associated Gene:

Gene:
MBL2
Ensembl Gene ID:
ENSAPLG00000005476
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027844
9664515 - 9673144
8630
ENSAPLT00000005661
9664769 - 9673144
8376