Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9668250_9670261_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

9668250 - 9670261

Intron Length:

2012

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACAGAGC

5'SS Class:

major

3'SS Sequence:

AATCAAACTCTAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAA

U12 Branch Point Sequence:

TTTCTTTTAAAT

Flanking Amino Acid:

DGPKGEKGDPGEGLRGLQGF

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.4

0.48

1.1

61.3

43.5

Major BPS

90.4

0.7

90.2

19.3

Major PPT

57.6

0.17

46.1

40.5

Minor 5ss

30.9

-2.2

3.4

43.1

44.1

Minor BPS

0.77

1.3

86.29

32.9

Associated Gene:

Gene:

MBL2

Ensembl Gene ID:

ENSAPLG00000005476

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027844

9664515 - 9673144

8630

ENSAPLT00000005661

9664769 - 9673144

8376