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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9692191_9693371_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9692191 - 9693371
Intron Length:
1181

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTTTT
5'SS Class:
strong_major
3'SS Sequence:
GGGGGGGGTTTAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AGCTAAC
U12 Branch Point Sequence:
AGAAAGCTAACC
Flanking Amino Acid:
FRQRLSRLEGALTLKGKIAK
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.9
0.92
0.9
89.8
23.7
Major BPS
60.6
0.26
1.1
61.4
34.2
Major PPT
46.7
-0.1
1.1
35
45.6
Minor 5ss
46.2
-0.4
2.8
67.4
43.6
Minor BPS
39.7
-0.8
2.3
49.62
39.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000005555
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005736
9690193 - 9693748
3556