Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9701679_9702328_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9701679 - 9702328

Intron Length:

650

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACCCGCA

5'SS Class:

major

3'SS Sequence:

ATTTTGTTTTTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCTGAT

U12 Branch Point Sequence:

TAATCTCTGATT

Flanking Amino Acid:

EKGIAQGFISGFKSLPGKET

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

65.5

0.37

1.3

57.1

42.5

Major BPS

0.72

38.9

Major PPT

83.4

0.75

0.8

81.7

35.4

Minor 5ss

41.1

-1

3.4

47.2

Minor BPS

56.5

0.29

1.6

73.24

37.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000005647

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000005828

9701483 - 9703440

1958