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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9722355_9726780_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
9722355 - 9726780
Intron Length:
4426

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAC
U12 Branch Point Sequence:
AACTATGTACAT
Flanking Amino Acid:
NFDLRPGVIVSFFWNGSFCH
Intron Amino Acid Position:
363

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.6
33.7
Major BPS
69.5
0.49
1
71.3
30.3
Major PPT
81.3
0.7
0.8
73.6
37
Minor 5ss
37.7
-1.4
3.1
47.6
48.1
Minor BPS
38.6
-0.7
2.2
53.26
41.9

Associated Gene:

Gene:
MAT1A
Ensembl Gene ID:
ENSAPLG00000005651
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005875
9722318 - 9742809
20492