Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9726915_9727421_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9726915 - 9727421

Intron Length:

507

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTTTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTGCTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGATAAT

U12 Branch Point Sequence:

TCATACTTGATA

Flanking Amino Acid:

AELCRRVLVQVSYAIGVAQP

Intron Amino Acid Position:

319

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

91.1

0.97

0.8

89.6

24.2

Major BPS

72.6

0.56

1.2

72.3

40.4

Major PPT

0.79

0.8

81.6

30.4

Minor 5ss

57.8

0.27

2.3

75.5

40.6

Minor BPS

0.37

1.5

67.85

38.6

Associated Gene:

Gene:

MAT1A

Ensembl Gene ID:

ENSAPLG00000005651

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025063

9725457 - 9742809

17353

ENSAPLT00000005875

9722318 - 9742809

20492