Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9729987_9730686_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9729987 - 9730686

Intron Length:

700

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAATATT

5'SS Class:

strong_major

3'SS Sequence:

CTGCTCTATTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GCTCTAT

U12 Branch Point Sequence:

CCTGCTCTATTC

Flanking Amino Acid:

PWLRPDSKTQVTVQYIQQNG

Intron Amino Acid Position:

185

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.5

0.96

0.8

93.3

21.1

Major BPS

47.4

-0.1

1.5

46.4

46.5

Major PPT

75.7

0.58

0.9

73.4

36.1

Minor 5ss

-1

59.7

44.8

Minor BPS

43.2

-0.5

1.9

49.69

41.9

Associated Gene:

Gene:

MAT1A

Ensembl Gene ID:

ENSAPLG00000005651

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025063

9725457 - 9742809

17353

ENSAPLT00000005875

9722318 - 9742809

20492