Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9730831_9732355_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

9730831 - 9732355

Intron Length:

1525

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGACATG

5'SS Class:

major

3'SS Sequence:

TCTCCTCCTGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAA

U12 Branch Point Sequence:

TTAACAGTAATT

Flanking Amino Acid:

DEEDVGAGDQGLMFGYATDE

Intron Amino Acid Position:

137

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.4

0.5

1.1

45.4

Major BPS

87.3

0.93

0.8

36.5

Major PPT

78.6

0.64

0.7

73.7

24.5

Minor 5ss

-1

3.3

56.4

Minor BPS

49.3

0.02

2.2

74.97

41.6

Associated Gene:

Gene:

MAT1A

Ensembl Gene ID:

ENSAPLG00000005651

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025063

9725457 - 9742809

17353

ENSAPLT00000005875

9722318 - 9742809

20492