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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9764755_9765393_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9764755 - 9765393
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGGA
5'SS Class:
major
3'SS Sequence:
CTGTTTGGTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
GCTTTCTGACCC
Flanking Amino Acid:
ATKRNRPNVQVGDLIYGKFL
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65
0.35
1.3
54.9
44.4
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
70.1
0.45
1
69.2
41.8
Minor 5ss
32.7
-2
3.8
46.6
48.7
Minor BPS
52.4
0.05
1.8
63.34
42.2

Associated Gene:

Gene:
EXOSC3
Ensembl Gene ID:
ENSAPLG00000005966
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006170
9764218 - 9767107
2890