About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9815053_9823733_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9815053 - 9823733
Intron Length:
8681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGGTA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTCAT
U12 Branch Point Sequence:
TTTCTGTTACCG
Flanking Amino Acid:
AVGLWAWSEKGVLSDLTKVT
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.2
0.97
0.8
82.2
30.9
Major BPS
69.7
0.49
1.3
71.4
45.1
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
32.8
-2
3.7
46.2
49.1
Minor BPS
48.2
-0.2
2.3
63.99
44.1

Associated Gene:

Gene:
TSPAN14
Ensembl Gene ID:
ENSAPLG00000006013
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006265
9807310 - 9834587
27278