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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9819713_9823733_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9819713 - 9823733
Intron Length:
4021

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTCTG
5'SS Class:
major
3'SS Sequence:
TTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGGTCAT
U12 Branch Point Sequence:
TTTCTGTTACCG
Flanking Amino Acid:
LLDFQQQLHHGVLSDLTKVT
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
70.8
41
Major BPS
69.7
0.49
1.3
71.4
45.1
Major PPT
94.1
0.99
0.5
92.8
16.8
Minor 5ss
34.8
-1.7
3.1
45.9
42.4
Minor BPS
48.2
-0.2
2.3
63.99
44.1

Associated Gene:

Gene:
TSPAN14
Ensembl Gene ID:
ENSAPLG00000006013
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020893
9807310 - 9834587
27278