About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9823881_9824498_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9823881 - 9824498
Intron Length:
618

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTTCTTTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TATTCTCTAATT
Flanking Amino Acid:
LRENICLLKFFCGTIVFIFL
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
80
32.8
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
91.2
0.93
0.6
87.3
23.1
Minor 5ss
42.9
-0.8
2.8
60.8
37.7
Minor BPS
69.9
0.7
1.6
85.86
34

Associated Gene:

Gene:
TSPAN14
Ensembl Gene ID:
ENSAPLG00000006013
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020893
9807310 - 9834587
27278
ENSAPLT00000006265
9807310 - 9834587
27278