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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9837935_9839335_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
9837935 - 9839335
Intron Length:
1401

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTAA
5'SS Class:
strong_major
3'SS Sequence:
CAAGAAATAGAAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TGATCTGAGACA
Flanking Amino Acid:
MSLLCSLLNSEDKIKETLEQ
Intron Amino Acid Position:
403

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1.1
80.2
30.6
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
45.5
-0.2
1.1
36.4
37.7
Minor 5ss
45.1
-0.5
2.6
58.1
46.5
Minor BPS
45
-0.4
2.3
59.23
40.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006366
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006625
9837825 - 9856388
18564