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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9840653_9841542_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9840653 - 9841542
Intron Length:
890

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGAGTA
5'SS Class:
major
3'SS Sequence:
TTTGCTTTAACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TTTGCTTTAACA
Flanking Amino Acid:
ASIVRHNRSQEVVKAVQEAQ
Intron Amino Acid Position:
320

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.2
0.57
1
70.6
33.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
81
0.7
0.9
77.2
35.8
Minor 5ss
41.8
-0.9
3.4
55.6
43.3
Minor BPS
81.5
0.98
1.2
86.93
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006366
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006625
9837825 - 9856388
18564