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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9841683_9845256_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9841683 - 9845256
Intron Length:
3574

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGGAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCTCTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GAGATTTTAAAT
Flanking Amino Acid:
GTLRMLADGQADAAEILGQD
Intron Amino Acid Position:
273

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
1
78.6
37.2
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
90.5
0.91
0.6
88.8
20.4
Minor 5ss
32.5
-2
3.5
47.3
48.3
Minor BPS
53.1
0.18
1.4
63.56
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006366
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006625
9837825 - 9856388
18564