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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9845383_9848007_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9845383 - 9848007
Intron Length:
2625

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGAAT
5'SS Class:
major
3'SS Sequence:
TTCCATTTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTAAA
U12 Branch Point Sequence:
CCTGGTTCCATT
Flanking Amino Acid:
LSALRNLAIPVVNKVQMLEE
Intron Amino Acid Position:
231

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.4
0.55
1.1
72.2
39
Major BPS
65.2
0.38
0.9
65.5
27.9
Major PPT
80.2
0.68
0.8
73
37
Minor 5ss
32.2
-2
3.5
47.9
47.8
Minor BPS
37.7
-0.8
2.2
50.4
44.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006366
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006625
9837825 - 9856388
18564