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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9854299_9856267_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9854299 - 9856267
Intron Length:
1969

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
ATGCTATTACCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TCATCTTTAACT
Flanking Amino Acid:
RAIGRICYDNRDLQEELVKV
Intron Amino Acid Position:
41

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1.3
72.7
38.8
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
67.8
0.4
1
59.9
44.5
Minor 5ss
37.9
-1.4
2.8
50.4
39.3
Minor BPS
82.6
1.1
1
88.57
36.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000006366
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006625
9837825 - 9856388
18564