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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9895389_9909318_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9895389 - 9909318
Intron Length:
13930

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTGGCTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
VLRRTARRKQSDGKHVQWLC
Intron Amino Acid Position:
62

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
81.6
33.2
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
75.4
0.57
1
69.1
41.8
Minor 5ss
55.3
0.18
2.7
73.8
36.4
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
SH2D4B
Ensembl Gene ID:
ENSAPLG00000007100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007372
9895205 - 9960002
64798