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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9910768_9920438_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9910768 - 9920438
Intron Length:
9671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGCATA
5'SS Class:
major
3'SS Sequence:
TCATTTTGCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAT
U12 Branch Point Sequence:
TTTTACTTCATT
Flanking Amino Acid:
EEEKIQEELKKREEEERQKG
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1.2
71.8
39.4
Major BPS
78.6
0.71
1
79.6
32.9
Major PPT
72.5
0.51
0.9
73
37.1
Minor 5ss
45.4
-0.5
2.5
58
46.3
Minor BPS
67.2
0.62
1.9
88.84
36.2

Associated Gene:

Gene:
SH2D4B
Ensembl Gene ID:
ENSAPLG00000007100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007372
9895205 - 9960002
64798