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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9920584_9928245_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9920584 - 9928245
Intron Length:
7662

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TCATTCCACCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTCCCATTCATT
Flanking Amino Acid:
SDDDQEWEEQLRRSKAADEE
Intron Amino Acid Position:
213

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
72.3
34.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
70.4
0.46
0.9
62.6
38.6
Minor 5ss
31.6
-2.1
2.7
34
41.5
Minor BPS
51.1
0.12
2
74.4
42.6

Associated Gene:

Gene:
SH2D4B
Ensembl Gene ID:
ENSAPLG00000007100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007372
9895205 - 9960002
64798