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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9932141_9956786_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
9932141 - 9956786
Intron Length:
24646

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAATACGC
5'SS Class:
major
3'SS Sequence:
TATTCATTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
GTCTTCATAACT
Flanking Amino Acid:
NTNRIAQWFHGIISRQEAEE
Intron Amino Acid Position:
319

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70
0.47
1.1
55.4
42
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
73.2
0.52
1
66.5
43.9
Minor 5ss
32.5
-2
3.1
39.9
40.7
Minor BPS
66.7
0.6
1.6
81.33
40.1

Associated Gene:

Gene:
SH2D4B
Ensembl Gene ID:
ENSAPLG00000007100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007372
9895205 - 9960002
64798