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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9957008_9959909_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
9957008 - 9959909
Intron Length:
2902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACACTT
5'SS Class:
major
3'SS Sequence:
TGTATCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
GATATTCTAATT
Flanking Amino Acid:
TLTDLIDFHKEEIITSSGGE
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.5
40.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
80
0.67
0.8
77.8
36.5
Minor 5ss
43.4
-0.7
3.2
65.6
45.4
Minor BPS
49.8
0.06
1.6
66.98
37.7

Associated Gene:

Gene:
SH2D4B
Ensembl Gene ID:
ENSAPLG00000007100
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007372
9895205 - 9960002
64798