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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_6_9992806_10017306_F

Intron Information:

Intron Rank:
142439
Intron Class:
major
Intron Phase:
Intron Coordinates:
9992806 - 10017306
Intron Length:
24501

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTATCTCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
CTTTTCTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.89
0.9
83.2
30.8
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
78.8
0.65
0.8
73.2
31.7
Minor 5ss
33.6
-1.9
3
41.3
45.3
Minor BPS
72.9
0.8
1.6
87.15
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026733
Chromosome:
6

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026699
9992754 - 10026212
33459