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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10073316_10073720_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10073316 - 10073720
Intron Length:
405

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAGGTCTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCAAAT
U12 Branch Point Sequence:
CTTTCTTCCACA
Flanking Amino Acid:
VKWLPQNDLLAHPKTRAFIT
Intron Amino Acid Position:
358

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.7
44.5
Major BPS
68.5
0.46
1
73.3
28.9
Major PPT
84.5
0.78
0.7
79.8
25.8
Minor 5ss
36.4
-1.5
3.3
49
47.2
Minor BPS
54.9
0.15
2
71.01
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014719
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033849
10071646 - 10075996
4351
ENSAPLT00000031860
10070179 - 10091309
21131
ENSAPLT00000015402
10071298 - 10076420
5123
ENSAPLT00000042516
10071934 - 10091309
19376