About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10073809_10074076_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10073809 - 10074076
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTACAGTTA
5'SS Class:
major
3'SS Sequence:
CTTTCCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAT
U12 Branch Point Sequence:
CTTTCCTTCACA
Flanking Amino Acid:
ADALGSVPQTVLWRYTGKVP
Intron Amino Acid Position:
329

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.5
0.32
1.1
60.5
40.8
Major BPS
67.6
0.44
1.2
75
40
Major PPT
84.7
0.78
0.7
79.5
26
Minor 5ss
39.1
-1.2
3.6
54.7
49.5
Minor BPS
75
0.78
1.7
83.03
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014719
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015402
10071298 - 10076420
5123
ENSAPLT00000042516
10071934 - 10091309
19376
ENSAPLT00000033849
10071646 - 10075996
4351
ENSAPLT00000031860
10070179 - 10091309
21131
ENSAPLT00000029450
10073677 - 10079798
6122