Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10074209_10075568_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10074209 - 10075568

Intron Length:

1360

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTAGTTAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTGTTGGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

AGGATTTTGACT

Flanking Amino Acid:

SCTQEKPLSKEFEAIVNASG

Intron Amino Acid Position:

285

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.7

0.82

1.1

81.4

27.6

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

76.3

0.59

1.1

72.9

42.2

Minor 5ss

35.9

-1.6

2.6

41.2

45.2

Minor BPS

55.5

0.25

1.3

65.89

38.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014719

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015402

10071298 - 10076420

5123

ENSAPLT00000042516

10071934 - 10091309

19376

ENSAPLT00000033849

10071646 - 10075996

4351

ENSAPLT00000031860

10070179 - 10091309

21131

ENSAPLT00000029450

10073677 - 10079798

6122