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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10076342_10079704_R

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
10076342 - 10079704
Intron Length:
3363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTTTGTCTC
5'SS Class:
weak_major
3'SS Sequence:
AATTTTTGTGAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTGGAA
U12 Branch Point Sequence:
TCCTGTGGAATT
Flanking Amino Acid:
LTSREFFFYSSGKLLVVPID
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
55.8
0.14
1.2
55
42.2
Major BPS
48.8
-0
1.5
49.1
46.3
Major PPT
66.9
0.38
1.2
68.3
41.6
Minor 5ss
43.4
-0.7
2.7
60.3
37.9
Minor BPS
41.7
-0.5
2.3
59.4
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014719
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029450
10073677 - 10079798
6122