Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10147718_10148214_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10147718 - 10148214

Intron Length:

497

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAAGCTTG

5'SS Class:

strong_major

3'SS Sequence:

ATCTATCTGACAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TATCTAT

U12 Branch Point Sequence:

TTACCCTTCACT

Flanking Amino Acid:

QEDFIMLNLVHSSSDDNMAP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.1

0.76

71.5

41.1

Major BPS

0.4

1.3

64.8

42.4

Major PPT

70.1

0.45

65.2

40.4

Minor 5ss

47.6

-0.2

2.8

61.4

44.4

Minor BPS

70.7

0.73

1.7

86.67

38.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014141

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014727

10145891 - 10153781

7891