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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10148669_10149003_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10148669 - 10149003
Intron Length:
335

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCCTC
5'SS Class:
major
3'SS Sequence:
AATGTCGTTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCAAT
U12 Branch Point Sequence:
CTTTCTTGCAAT
Flanking Amino Acid:
YEEGLARSKHSKKPLMVIHH
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
69
42.1
Major BPS
61.8
0.29
1.4
70.7
42.6
Major PPT
71.4
0.48
1
66.4
44.3
Minor 5ss
42.5
-0.8
3.1
59.7
44.9
Minor BPS
49.3
0.03
2
73.72
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014141
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014727
10145891 - 10153781
7891