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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10169334_10169476_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10169334 - 10169476
Intron Length:
143

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGCATT
5'SS Class:
strong_major
3'SS Sequence:
TACTTTATTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTACTTTATTT
Flanking Amino Acid:
EEQKPHRDKEGKGDTEIKDR
Intron Amino Acid Position:
85

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
1
81.8
38.5
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
79.7
0.67
0.8
78.3
34.5
Minor 5ss
43.9
-0.7
3.2
65.5
45.8
Minor BPS
67.5
0.63
1.6
84.37
36.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013889
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014488
10164423 - 10190081
25659