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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10169942_10171058_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10169942 - 10171058
Intron Length:
1117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGGA
5'SS Class:
strong_major
3'SS Sequence:
TACTTGTTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAA
U12 Branch Point Sequence:
AGAATCTAAAGC
Flanking Amino Acid:
EHGKDKAEKKSTDSEESKLR
Intron Amino Acid Position:
240

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1
74.3
36.3
Major BPS
76.5
0.66
0.8
75.9
24.9
Major PPT
79
0.65
0.8
77.1
36.8
Minor 5ss
32.1
-2
3.1
41.4
44.9
Minor BPS
44.8
-0.4
1.9
50.66
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013889
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014488
10164423 - 10190081
25659