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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10171137_10178419_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10171137 - 10178419
Intron Length:
7283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTTAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTTTTTAAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
TTTTTTTTTAAG
Flanking Amino Acid:
KNSKCQPDNESESPAGISRQ
Intron Amino Acid Position:
266

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1.1
83
36.1
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
84.7
0.78
0.9
90.3
22.7
Minor 5ss
33.8
-1.8
2.6
43.7
43.3
Minor BPS
56.3
0.05
1.8
67.7
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000013889
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014488
10164423 - 10190081
25659