Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10189253_10189990_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10189253 - 10189990

Intron Length:

738

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTTTGTTTC

5'SS Class:

major

3'SS Sequence:

TCTGTTCTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATAAAT

U12 Branch Point Sequence:

TCCCTTTAAAAT

Flanking Amino Acid:

PDDLPPQAIQRRIPRPSSAR

Intron Amino Acid Position:

354

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.1

76.1

Major BPS

74.5

0.61

79.6

29.1

Major PPT

0.81

0.8

80.6

31.4

Minor 5ss

47.2

-0.3

2.4

61.9

42.9

Minor BPS

47.3

-0.1

1.7

61.29

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000013889

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014488

10164423 - 10190081

25659