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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10233200_10234958_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
10233200 - 10234958
Intron Length:
1759

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCACGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TTTCTCTGACCT
Flanking Amino Acid:
KSLLQEESFQSRINEKSVWC
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
62.6
0.28
1
54.7
35.1
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
60.1
0.4
1.8
82.07
39.1

Associated Gene:

Gene:
ASB1
Ensembl Gene ID:
ENSAPLG00000013688
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014253
10228393 - 10240686
12294