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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10383665_10384405_R

Intron Information:

Intron Rank:
152109
Intron Class:
major
Intron Phase:
Intron Coordinates:
10383665 - 10384405
Intron Length:
741

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CCCCCGTCTCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
AGTATTTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
70.5
0.46
0.9
60.4
35.3
Minor 5ss
34.9
-1.7
3.5
48.2
47.9
Minor BPS
49.3
-0
1.5
57.46
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029423
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021048
10383412 - 10384841
1430