About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10384486_10384579_R


Intron Information:

Intron Rank:
152110

Intron Class:
major

Intron Phase:

Intron Coordinates:
10384486 - 10384579

Intron Length:
94

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
AGT|GTAAGATGG

5'SS Class:
major

3'SS Sequence:
TTTCCTATCCAAG|G

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TTAAAAT

U12 Branch Point Sequence:
TGTGCAGTAATT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
67.5
0.41
1.2
56.3
43.6

Major BPS
70.6
0.51
1.1
75.9
34.4

Major PPT
69.7
0.44
1
68.4
36.3

Minor 5ss
39.3
-1.2
3.1
48.3
47.2

Minor BPS
48.5
-0
2.3
73.64
43.4

Associated Gene:

Gene:

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

10371844 - 10384841
12998

10383412 - 10384841
1430