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Intron Name: Anas_platyrhynchos_platyrhynchos_7_10461757_10462081_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

10461757 - 10462081

Intron Length:

325

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GCG|GTGAGTTGC

5'SS Class:

strong_major

3'SS Sequence:

CGAAATCGCTCAG|A

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TGCGAAA

U12 Branch Point Sequence:

GCCTGCGAAATC

Flanking Amino Acid:

LSVGVKPAEKRPDDEPMEEE

Intron Amino Acid Position:

1049

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

0.9

69.6

37.9

Major BPS

48.1

-0.1

1.4

55.6

40.2

Major PPT

0.11

1.1

50.3

43.3

Minor 5ss

35.6

-1.6

2.9

44.4

43.5

Minor BPS

38.7

-0.8

2.4

45.68

43.9

Associated Gene:

Gene:

HDAC4

Ensembl Gene ID:

ENSAPLG00000004358

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019634

10461337 - 10608961

147625

ENSAPLT00000017922

10461337 - 10639175

177839

ENSAPLT00000004612

10461717 - 10667022

205306

ENSAPLT00000040949

10461337 - 10666954

205618

ENSAPLT00000037315

10461337 - 10667022

205686