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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10462224_10464265_R

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
10462224 - 10464265
Intron Length:
2042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTATA
5'SS Class:
major
3'SS Sequence:
ACCTCTGCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
CTTTTCTCACCT
Flanking Amino Acid:
HSMEKVIEIHSKYWHSLQRY
Intron Amino Acid Position:
1002

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1
77.2
32.8
Major BPS
85
0.87
0.8
85.6
23
Major PPT
67.4
0.39
0.9
60.5
34.7
Minor 5ss
36.1
-1.6
2.9
47.9
41.8
Minor BPS
59
0.36
1.9
79.4
43

Associated Gene:

Gene:
HDAC4
Ensembl Gene ID:
ENSAPLG00000004358
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017922
10461337 - 10639175
177839
ENSAPLT00000004612
10461717 - 10667022
205306
ENSAPLT00000040949
10461337 - 10666954
205618
ENSAPLT00000037315
10461337 - 10667022
205686
ENSAPLT00000019634
10461337 - 10608961
147625