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Intron Name: Anas_platyrhynchos_platyrhynchos_7_10464351_10470226_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10464351 - 10470226

Intron Length:

5876

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGGGGA

5'SS Class:

strong_major

3'SS Sequence:

TCTCTCCCTGCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGTGAT

U12 Branch Point Sequence:

TGTGATAACATT

Flanking Amino Acid:

ACVSALLGNELDPLPEKVFQ

Intron Amino Acid Position:

974

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

65.7

40.1

Major BPS

81.2

0.78

1.1

71.4

45.1

Major PPT

83.2

0.75

0.7

77.4

24.6

Minor 5ss

34.7

-1.7

3.5

46.6

48.7

Minor BPS

35.4

-1

2.2

53.75

42.3

Associated Gene:

Gene:

HDAC4

Ensembl Gene ID:

ENSAPLG00000004358

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000017922

10461337 - 10639175

177839

ENSAPLT00000004612

10461717 - 10667022

205306

ENSAPLT00000040949

10461337 - 10666954

205618

ENSAPLT00000037315

10461337 - 10667022

205686

ENSAPLT00000019634

10461337 - 10608961

147625