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Intron Name: Anas_platyrhynchos_platyrhynchos_7_10470361_10472110_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10470361 - 10472110

Intron Length:

1750

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTAAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

TTTCCCCTCGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

CTCGCAT

U12 Branch Point Sequence:

TTCTCTCGCATT

Flanking Amino Acid:

PLGGYNLSAKCFGYLTKQLM

Intron Amino Acid Position:

929

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.5

0.81

80.8

34.4

Major BPS

57.6

0.19

1.4

38.9

Major PPT

82.3

0.73

0.7

77.1

24.7

Minor 5ss

44.3

-0.6

2.9

62.8

41.9

Minor BPS

45.3

-0.2

2.1

68.92

42.6

Associated Gene:

Gene:

HDAC4

Ensembl Gene ID:

ENSAPLG00000004358

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019634

10461337 - 10608961

147625

ENSAPLT00000017922

10461337 - 10639175

177839

ENSAPLT00000004612

10461717 - 10667022

205306

ENSAPLT00000040949

10461337 - 10666954

205618

ENSAPLT00000037315

10461337 - 10667022

205686