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Intron Name: Anas_platyrhynchos_platyrhynchos_7_10481175_10483266_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10481175 - 10483266

Intron Length:

2092

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGAGCA

5'SS Class:

strong_major

3'SS Sequence:

TTCCCTTTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTGTAT

U12 Branch Point Sequence:

GTATGTGTAACT

Flanking Amino Acid:

FFPGSGAPDEVGTGAGVGFN

Intron Amino Acid Position:

906

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.6

0.96

0.8

77.8

Major BPS

58.9

0.22

1.5

59.6

46.8

Major PPT

89.1

0.88

0.6

87.7

22.4

Minor 5ss

30.7

-2.2

3.3

39.5

45.9

Minor BPS

48.9

-0

2.4

73.14

43.8

Associated Gene:

Gene:

HDAC4

Ensembl Gene ID:

ENSAPLG00000004358

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040949

10461337 - 10666954

205618

ENSAPLT00000037315

10461337 - 10667022

205686

ENSAPLT00000019634

10461337 - 10608961

147625

ENSAPLT00000017922

10461337 - 10639175

177839