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Intron Name: Anas_platyrhynchos_platyrhynchos_7_10499328_10505278_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

10499328 - 10505278

Intron Length:

5951

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAATCCCA

5'SS Class:

major

3'SS Sequence:

TTTCCTCTTTCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATTTCAT

U12 Branch Point Sequence:

ATTTCATCACCC

Flanking Amino Acid:

QETGLRGKCECIRGRKATLE

Intron Amino Acid Position:

717

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.3

0.64

1.1

64.4

41.6

Major BPS

91.2

1.02

0.7

91.7

20.2

Major PPT

90.5

0.91

0.6

88.7

20.5

Minor 5ss

38.2

-1.3

49.2

46.5

Minor BPS

50.9

0.01

2.1

70.6

40.3

Associated Gene:

Gene:

HDAC4

Ensembl Gene ID:

ENSAPLG00000004358

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000019634

10461337 - 10608961

147625

ENSAPLT00000017922

10461337 - 10639175

177839

ENSAPLT00000004612

10461717 - 10667022

205306

ENSAPLT00000040949

10461337 - 10666954

205618

ENSAPLT00000037315

10461337 - 10667022

205686