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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_105086_105755_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
105086 - 105755
Intron Length:
670

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
GTTTTAACCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TGTGTTTTAACC
Flanking Amino Acid:
KSQNGQSFFQEEPVHMSIQE
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.6
0.96
0.8
77.8
30
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
73.6
0.53
0.9
66.8
38.4
Minor 5ss
30.7
-2.2
3.3
39.5
45.9
Minor BPS
69.3
0.59
1.3
74.15
36.9

Associated Gene:

Gene:
CFLAR
Ensembl Gene ID:
ENSAPLG00000015311
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015969
98022 - 111548
13527