About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_10514243_10524767_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
10514243 - 10524767
Intron Length:
10525

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCACG
5'SS Class:
major
3'SS Sequence:
GGGATGTTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATCA
Flanking Amino Acid:
FQQQQLHINKIISKPNEPAR
Intron Amino Acid Position:
524

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
66.3
45.2
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
67.1
0.38
1.1
61.6
48.5
Minor 5ss
38.3
-1.3
3.1
49
47
Minor BPS
65.8
0.49
1.7
80.18
35.8

Associated Gene:

Gene:
HDAC4
Ensembl Gene ID:
ENSAPLG00000004358
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037315
10461337 - 10667022
205686
ENSAPLT00000019634
10461337 - 10608961
147625
ENSAPLT00000017922
10461337 - 10639175
177839
ENSAPLT00000004612
10461717 - 10667022
205306
ENSAPLT00000040949
10461337 - 10666954
205618